NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079204_10110332

Scaffold Ga0079204_10110332


Overview

Basic Information
Taxon OID3300005654 Open in IMG/M
Scaffold IDGa0079204_10110332 Open in IMG/M
Source Dataset NamePorphyra Blade Metagenome Co-Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1330
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameUSA: Blueberry Hill, Maine
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024469Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0079204_101103323F024469N/ALAHPAGMERNVARADCPPVCLKADCLPNKANTELSRQPDDVQPVADNKNLDVSSLVAMMANTTLQCEFESVSGDDHAQVMRRWVVADTNVEAIDVKVDVVLAGADDEE*
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