NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079204_10168276

Scaffold Ga0079204_10168276


Overview

Basic Information
Taxon OID3300005654 Open in IMG/M
Scaffold IDGa0079204_10168276 Open in IMG/M
Source Dataset NamePorphyra Blade Metagenome Co-Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)988
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameUSA: Blueberry Hill, Maine
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F036067Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0079204_101682761F023776AGGVIRSDEERFPIEEMPQLEDNPHDAKAFALRCGVTLLCSSESSAPISDRMEQLARFLLEECTADSVGACVNVDD
Ga0079204_101682762F036067N/AMVYKPGASHHWPDFRSRASAVAPPEDVHGDITCLALAETANLKNGEDTGTDTPETVELDVAVEAQKTDDNCVEMPTRVKRGTAEAFFHNEHHAVFGRTPCGNQLVLPKSFGERVLTLGHHATGVVHPGMNCWNVMLNAAVSPSAVKSKIQETRY*
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