Scaffold Ga0079204_10175223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0079204_10175223

Scaffold Ga0079204_10175223

Overview

Basic Information
Taxon OID	3300005654 Open in IMG/M
Scaffold ID	Ga0079204_10175223 Open in IMG/M
Source Dataset Name	Porphyra Blade Metagenome Co-Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	960
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	USA: Blueberry Hill, Maine
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086529	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079204_101752232	F086529	GGAGG	MGRGRTQDCVKLSKLLHGIGASTRPQRPVYTYRCLVLSVWSPRLRYCAEAQAVVNVVNPASARTSRLDCVAVVGQASRALSQGLQQACYARGTSAWRLKLDGARVRQPDFSKHNLNYTLNITRNKYAL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.