Scaffold Ga0079204_10256551

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079204_10256551

Scaffold Ga0079204_10256551

Overview

Basic Information
Taxon OID	3300005654 Open in IMG/M
Scaffold ID	Ga0079204_10256551 Open in IMG/M
Source Dataset Name	Porphyra Blade Metagenome Co-Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	728
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	USA: Blueberry Hill, Maine
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051654	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079204_102565511	F051654	N/A	MTQHKSVQLDHVLQMYHLRYHRGYRPSSIREPPVESATSITVQQSCRPVLDTGAGVNIVRTSVLPSNWMAYAEELTTLPRIRDANNNRLVTNYAIHLYVDTGGVRLFDRFVVSDNLSVPCILGTEFIEHNIEAILPRLRKIVWQGHVRCTEELPLPTPILACLNGNAWDRHWHDKPAGLRACKQVRVDGQQEEWIIATCDPPGMVTITPNARLCRHKSMAVARGLAIVKPDEPF

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