NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10028320

Scaffold Ga0078894_10028320


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10028320 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4599
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F024559Metagenome / Metatranscriptome205Y
F043407Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_100283205F043407GGAMTNILNSTLSTISPTYGAIPPLTAGQVFTTTNTSGQFLTSSGTNGVSWANPTDNVMVVKQSPAELEVKGRVVINGVDLEERLKTIEKVLCIPERDVKLEAKHPKLKKLYDEYITALGKYRTFEAIKGDNNGTT*
Ga0078894_100283206F009462AGGAGMELHESVKHTAKEMVIKEHDGFRLTLKKHEVLSPKGLFSIDMVQESLKDGKVVESQVYNFFMTKEECQTLAYGLTA*
Ga0078894_100283208F024559AGGAMTSLIKLILGVALIVVVIVFGPIAGIWSLNTLFPVLEIPYTLQTWAAFFLLFGSVTGLRFGSKK*
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