NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10035099

Scaffold Ga0078894_10035099


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10035099 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4160
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016966Metagenome / Metatranscriptome243Y
F036665Metagenome / Metatranscriptome169N
F040100Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0078894_1003509911F036665N/AMNNKSWKPEVLVDGSWATNGLRFATQTEAFESAMQTRMRWWAVDDVRATESEDAVNYQLTEGKLVEVNI*
Ga0078894_100350992F040100N/AMNTDFTVLFKTITESIPNYLMFMGLVFLVYSLTIAFVKVLSDNVVKVVLAARAPVTFKIKDGGELENT*
Ga0078894_100350999F016966N/AMKNVTFKRVQNQSLPNLYSGTINGEIVGFIYKPTDTKSDRNAWRSYVGVGDKARFLYHTWDMNDAMEAVQLAVK*
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