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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005662 Open in IMG/M |
| Scaffold ID | Ga0078894_10050808 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3512 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004256 | Metagenome | 446 | Y |
| F029568 | Metagenome / Metatranscriptome | 188 | Y |
| F043882 | Metagenome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078894_100508082 | F004256 | AGG | MKYEYYWNDIPGVGLSRNNLIYTSLISEDKKTFVQWYFNDINYHKDQNEVVDPELMQAKWDREIFYLSQMSQHYPDLVPKIKNIDILEKKIYLEIDGLDFWNRAGCLTENYDSVLPDWQEQMLNIIRAYKDLGWYKFSMHPSSYFVVDGKLKSINYFFVYSQDAGPISIADHSSHIHSHRQEIMRKQVEAMGLDWNAPQPLSKLQELCFESFRTNYPADFIEKAKEIYRD* |
| Ga0078894_100508084 | F029568 | N/A | MYRYDLSNTEIKIYYESCPEFESVRELCLQEDNWLRKNYVKENLIIEDHTGYGVVYQKSTGKPMVMGGIFNDGRYPKNVAKQINRLYTFPEFRMKHTDMTDGFRVTCSLIDALEKVNKYDIYLITMQNRPRGGKRWWDTWVNHMDTASNGKWTLGTGYIQTCNAQVQKCWQNYVYYETTSGAFAEWAPAIINEEGWAAMPEGA* |
| Ga0078894_100508086 | F043882 | N/A | MGTFYIPKPELSYVHVPRTGMAMKKIISDWLKPNFNVVDNDPWMIDHPNLQMVRERISTGKTISIVRNPWQRVYSLYRKVAKEGYWLDWNDQTLLDLKPINEWVADYCNPDIPFVFPRWFNKTTNQIDFLNYNGNWVDFIIKAEELETGFKPVQEYLDCTVPLPDISGYDHWEFKQYFNDASIQAIKKVHERDVDFFKYSI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |