Scaffold Ga0078894

Basic Information
Taxon OID	3300005662 Open in IMG/M
Scaffold ID	Ga0078894_10078215 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005662 Open in IMG/M

Scaffold ID

Ga0078894_10078215 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2874
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2874

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100782152	F005054	N/A	MAEILIRTQSPITHQIFWNGDVTVPDTTPIVKLYDVTSDPAISPAINPTHLLTILTSFPDENNPGSYTVNIPYQYTDRNKTLRLQWEYTIGSTNVIRSDEVYVVTPYVDFNHVQDLGFSIDSSDPNYKSYKELVRAERYARKQIEQHTGQNFFLYDDVYVVYGYDSDILPLPAKIDTLHELYARDILLLDTLNEIDNWNYPVEISETGYGIKVNRAGMLDNTVYIANGMVPPSIHDYGSGVFQSGVPYKVQGRFGWEKVPDDVELAAIELMKDYFNKDTVWRNKYIKKISTFDWDFEYTGEAHTGTGNAFADRLLADYVLTTKVEII*
Ga0078894_100782153	F001229	AGG	MNDLIDSVLSMHLDVYKQTEVQDADTGAIVREWSYYKTVACHAKGVISNSATTRSSDKQVFSNKYINDQIIQVRTSERLTPREKVTNIRDNEGNVIWHEINFPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0078894_100782154	F001900	GGA	MLIQASSGLERMMYANQNGPLKDSTVAQVSAFVYYEAAVIAKLTTNKAFQGAFTKIIFDQIDTDFGNYIDSLARTRPKSLHHVYEWKRAGNKSARLFKLNKISEQGLSFRINYSLLPSRSMVPAPKGKRRHMFINKAEVMEEGKPLVIRPKNAERLVFEYNGETVFMPKGAEVTVKRPGGAGARNQFSLAHSRFFSGRLVNESIKRSGFQRIFNSSMTKALKVPSDIKKVQYSFSPNTIRSQADAALTLSFGGSM*
Ga0078894_100782155	F000258	GGAGG	VTANYKLDAMLELRKYLWDQLSSRNIFDENDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQIMLTLYSTSVSDINEIRNYLTDEFRRMDESARDINKWSGLSDKFKFHSIWVADISPTAPSEELQGFFAAEVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078894_10078215

Overview

Ecosystem & Geography

Associated Families

Sequences