NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10080069

Scaffold Ga0078894_10080069


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10080069 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2842
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023109Metagenome / Metatranscriptome211Y
F085345Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_100800694F023109GGAGGMIRQATRYDIPRLLEIVEAYAYENPIKKLGESHNHFPRYVEELLFSIIHGRGFIYIDSHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDIVCTSISANGPLIDYTRRGYKSLSATFVRE*
Ga0078894_100800695F085345GGAMVATLIAGLEIIGFSTAMATFAVNFAISYVVTRAFADNPEAQQDMGVRQQVPPSAVNAIPIVYGNAYMGGTFVDAVLTTDQKTMYYVLAISSISPNGQFTFDTADMYYGDRKITFDGSDLTKVVSLTDEAGNVDTKVSGYLYINLYTSTTGGTITSANGASAPSTVMGGSDIAVGQRWTGTRQMNG
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