Scaffold Ga0073685_1049199

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073685_1049199

Scaffold Ga0073685_1049199

Overview

Basic Information
Taxon OID	3300005664 Open in IMG/M
Scaffold ID	Ga0073685_1049199 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1179
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum finnmarkense	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic → Freshwater Viral Communities From Emiquon Reservoir, Havana, Illinois, Usa

Source Dataset Sampling Location
Location Name	Havana, Illinois, USA
Coordinates	Lat. (^o)	40.362238	Long. (^o)	-90.047137	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013948	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073685_10491992	F013948	N/A	MRERIKVIRAYIFRGWEDEPGYTHPRLKILPPFFFELLAYLIGLSILYQIGAYLWSII*

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