NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073685_1055069

Scaffold Ga0073685_1055069


Overview

Basic Information
Taxon OID3300005664 Open in IMG/M
Scaffold IDGa0073685_1055069 Open in IMG/M
Source Dataset NameFreshwater viral communities from Emiquon reservoir, Havana, Illinois, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic → Freshwater Viral Communities From Emiquon Reservoir, Havana, Illinois, Usa

Source Dataset Sampling Location
Location NameHavana, Illinois, USA
CoordinatesLat. (o)40.362238Long. (o)-90.047137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073120Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0073685_10550692F073120N/AMKTLSVTEYAKRLGVTRSAVLLQIKEKRLAKGVTCKKIGNTYFLSVQGQKTNKK*
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