NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066905_100012849

Scaffold Ga0066905_100012849


Overview

Basic Information
Taxon OID3300005713 Open in IMG/M
Scaffold IDGa0066905_100012849 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4101
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000884Metagenome / Metatranscriptome849Y
F002350Metagenome / Metatranscriptome568Y
F042258Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0066905_1000128491F000884N/ALASDSVQKRNAFAACAAFRIEGLEASLDHAREIAVRDELGAVGHYIEAAQGYLAQIRLLHQAALDEFSAAQGE*
Ga0066905_10001284910F042258GGAGVSHDPDEISPTFKKHCFKCGTWNRVTVHRLPTDGDWDEAHPYFCADCGHQLGTERGFRISVEKDQD*
Ga0066905_1000128495F002350N/AMAQPMKDPQTQAHLPSFDQLRNNAAECIRLAEAACSSAHKSFFIEMADRWLTLAERAAKTQDR*
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Institute for Fundamental Biomedical Research
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