NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066905_100042334

Scaffold Ga0066905_100042334


Overview

Basic Information
Taxon OID3300005713 Open in IMG/M
Scaffold IDGa0066905_100042334 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2712
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006474Metagenome / Metatranscriptome372Y
F015141Metagenome / Metatranscriptome257Y
F029502Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0066905_1000423341F006474GGAGGMRGAENDEQMSFRRGYQQGAIDVFYAIERFLDPASREVLKAWIEKDVSIWRVKAMLDHPPTWRLNMIAGPRHA
Ga0066905_1000423342F015141N/AMSKPPIGINEELKTIEAARAVLSTNSNSKETIKVLRDAKYVAALAMTTLPSDKPLNDARHAVVTTLSDLVKALETDPTPQPEKIEKAKAAIRNLLWDLRAIQELRLRRLAE*
Ga0066905_1000423345F029502GGAGGMLSRSERYLAKAEKCQQISDAADASGTKRLYGVMASKWRQLAEKADETDKAPCWRKSRQAHLLRKIDKAESAIRELVALA*
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