NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066905_100085207

Scaffold Ga0066905_100085207


Overview

Basic Information
Taxon OID3300005713 Open in IMG/M
Scaffold IDGa0066905_100085207 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2092
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000252Metagenome / Metatranscriptome1455Y
F000461Metagenome / Metatranscriptome1108Y
F000788Metagenome / Metatranscriptome891Y
F002604Metagenome / Metatranscriptome544Y

Sequences

Protein IDFamilyRBSSequence
Ga0066905_1000852072F000788N/AMKPRTVYDKAVQDFTQIARLQATLNQHFRQASFAEFEMLMGLDDEVLKRYGLPRPILERALIEVYRTVVLNQEKSRPLDHDVDATNE*
Ga0066905_1000852073F000461AGCAGMTALTAMDKLLFWLGIGAAQKGAGSRPPVQRNWVVSLVVGTLVAALIIVGAFLLLVSQKL
Ga0066905_1000852074F002604GAGGMLGKLSIIGAVVMIPTALSAQMGGAGVHVGGAVNPGATVRGAVERGIPGPDLGTWRSPGREVHRSRKHTATKQRR*
Ga0066905_1000852078F000252GGAGMAREELKWQNIDADDLPAEVKKSFDAMVEAETAFKADLEKLLKNEGHMPEDKFLVISRKGKRLGVAYASTP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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