NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1019509

Scaffold Ga0076948_1019509


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1019509 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9673
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y
F022872Metagenome212Y
F027829Metagenome193N
F035741Metagenome / Metatranscriptome171N
F041161Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0076948_101950910F004838N/AMALSAQDKILYVANKLGLSTLGNMQGSTGAVYDVDTEISGQIFSSASRHQNPSITNVTENQFEVNEALLVETISFYVKSAGGSVQNFQAIYGSNAVILFDLVIGNKRVMKDTPVFGSGSPYTFANTAQFRQTFGEDTPTAFVPRHQVFMEGAGILIPPQVQWYVDYRVFDVVTGATIPMTDAGTLGCYLFGTRVLLNFNTSI*
Ga0076948_101950915F041161GGAMPYKNLVHTLRMMGKQVAESVEFADQFLPYHTTPQEIWAILKDNLIYKNDPPGVELLQSFPSLMNDNYWGTPGAGDCDCFTIAALACAAARNIPARAVIVGNNGEAPTHIYCQYLVNGRWIDFDLVSSDYGVTKPYKYRQTLKLH*
Ga0076948_101950916F027829N/AMSFTNRFEADISPKKTRIDAKAYQQYIDIPIGQNPETGKQYTFRAYIAVAKMQKKLNYKPTTLITLTFFKYKLHLQTRDIDALNSAFRKLSSFIDLQESNLKQKLNQELMTYEEWEQEYLERKKNGILSINR*
Ga0076948_10195092F035741N/AMTAADVIGKYLIAEVDVPIFAFPGGSQIGVVKKGLIAGPVFSWVEKSGKLYWAFDYTIPGQAPGSYYAEHRPSYWKLSATGAPSGVPTSITPSGLIPKWALPVGLGALALFLFK*
Ga0076948_10195097F022872N/AMSWSIPTKIEEDFISGKAQYRTFQTGVGGQSILPVPNNAYAVVFGYDFSPAGGGFKRNTVAPAITGVGPFSQINDLFVRYFETQQISFYTGTDFYPFIHHIDVKTTIAGLTFNNTNPADSFVTNFQANEEIDNTPISRQVYITSDKDITISVGLILDSDVASQNAIPQTNRTPALLTYGGSGQVVATQTDFGPAASPIQFMQPSPKDYQDFGFGLLPNGASGQAFATPDTARGLYDPSSLLQILGDNYRDAAACNYFLCLHYALYTQSVPEQRG*
Ga0076948_10195098F000710N/AMATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGILLSSAFTATPQTVINPKQLRITLTINNDVVIDDDVALHYATPATGGFAGGFPFFIPIPRRLTGQDTIQVRLVNAAASQNVDIVVWYRNEL*
Ga0076948_10195099F002287N/AMSQVGKLGYVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIMLAQFDTSPRLTLFGSAAQQTLSIIVGNQTVVKNLPIQFNQGNNGQAFDRLHENGGAVSDNVTGGGQYVQAVQPIEIRLLTDIVIPPQVAFEVRVESNNAAYGTGAVVCALSGYGKIFSAGSSF*
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