NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1084841

Scaffold Ga0076948_1084841


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1084841 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3299
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001322Metagenome722Y
F005480Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_10848413F001322AGGCGGMTLWNPEYRVKVNGSTKTSATLSGLTITSGRTDIYSQPIAGYCNLTLIETNEAAVDYDINDAVTVEVKDSTGAYVNLFGGFVTDLTVQVQTSGSTATSQRINIIAVGALARLSRAVFEGNLASDYDGDQIYAVLEGILFDRWNEVPAATQWNTYAPTTQWQDAENTGLGEIDRPGDYDLDSQSNLNDTAYNIAARLATSGLGYLYEDAQGRIGYADSTHRSQYLAANGYVDLDGNHAFGPGLAIIKRAGDVRNAITIAYTSSGNSTHTEEDAASIALYGQLATTISTTLKNQTDAEDQALFYLDLRAYPQFQLRQISFPVGSTEIDNTDRDSLLNVFMGMPVNIINLPGNMVNGEFQGFVEGWTWTASLGRLDLSMNVSPVAFSLQAFRWNIVPATEAWNTLSNTLEWIDATIVA*
Ga0076948_10848414F005480AGGAGMPTTSNFGWTTPADTDLVKDGAAAIRTLGNGIDTSPVDLKGGTTGQVLSKASNTDLDFS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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