Scaffold Ga0076925_1040072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0076925_1040072

Scaffold Ga0076925_1040072

Overview

Basic Information
Taxon OID	3300005748 Open in IMG/M
Scaffold ID	Ga0076925_1040072 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Vineyard Sound, MA, USA - control T7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2353
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062275	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076925_10400721	F062275	AGGA	MIAETINLVGEFISLPTNNDKWYEEYKKGEKFALSIKKKNALPLKDIYKKMYEDGIHYISLHFEGGHDEGGFDGDFLFQDKNKNVIKVKDINKYAPTGWIVNYIPLEYTFTKGKDKITQVFEHTQTNYSEVKLTEGWLMNKWYDFGFLEEWGSFAFEGHVHGDV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.