Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1003583 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26445 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (15.22%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F050992 | Metagenome | 144 | N |
F057997 | Metagenome | 135 | N |
F066595 | Metagenome | 126 | N |
F068604 | Metagenome | 124 | N |
F075863 | Metagenome | 118 | N |
F102810 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0078117_100358310 | F068604 | N/A | MANALRLTANGGCEYIDNTVARTGKKYYCFIVQADTVVATLTGGFAPDTTTNYLTSIGLSGKTLKQGAIIYAPGDAVFTNLTLTSGSIIAYSE* |
Ga0078117_10035832 | F057997 | GAG | MILMYFIKKQAMENKKQTFKEVFSEMKELFKDIFQDEIKDLKFADYKAKDGSIIRTDTEEIAIGSKLQVITPDGVMDLPVEITEMVIMVNEMPMKVYVENGVVKGIEPEEVIEEPVMEEMASDNNEQFEAKFAELNERLSKLEAALGLSNQALEAANNSILAQTDLNRKLFSLIEKVADAPSVEPKSTSKENFKKAQPTSLEEFRKKVYNY* |
Ga0078117_100358321 | F075863 | N/A | MKKTQSMAILDALLAGIVVNGSNAYAITKKECKCGTLNLHKLIAIIRELGYTVNEEWKTNPKTKTGYKEFSITNKKQKKNGN* |
Ga0078117_100358334 | F102810 | N/A | VIEELVNNKIYKQITRNICHNHELLEDLHSEAIIVIIEKQIDFSTIRNLRHYFSTVCWLTWHSNKFRKRYFVEHVTFVDNLNEIVEQNDNIDYSALISFLNDSPQTENEFYEQNLLKLYIQHGDAKKLSDKTKIPYRTVANDIKKIKEKLKRQHNEKNSHQSEHGEP* |
Ga0078117_100358342 | F066595 | AGGA | MFQLLATTYIIAKFIPKPLWLHRKPFTCPLCLTYWTFLIYQIINFTTYFDLITIPFTFALIASLFERLNDRYL* |
Ga0078117_100358343 | F050992 | AGG | MTEEIKQSLLNWESMGKNYSPTFNWSELNEIAIKSGNKPFNLGCSECRRQLLDYLLAIIKDGASK* |
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