NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1015744

Scaffold Ga0078117_1015744


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1015744 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2266
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_10157442F000258GGAGGMTNYKIDAVFELRKFLWEQLQDRQIFDIDDYYADNIGDHISPIIPVQQSGEMANFLSGKKHIVYDKIGMSYEDNWLICNEQILFTIYATDFNDINEIRNYLIDEFRRMDESAKDLNKWDKISDKIKFHSIYVVDISPTEPTDELQGFLSADVILEVKYSRITDGLGRFS*
Ga0078117_10157444F001229N/AMNSIVNSVLSMKMDVYKQIDFQDENTGAIKKEWMYDKTLECHAKGTIGNSSTSRSTDKQVFNNKYNIDQMIQVRTEAKLTIRDKITNIRNSEGIVIWSEINFPTETPTVFEVVGVTPITDPFGRILGYNSSMKRSENQIIGI*
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