NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1020586

Scaffold Ga0078117_1020586


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1020586 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3156
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_102058610F002060N/AMTLDPIIVGVSAAFVSGLGTALVNSYRDAKKEKNRQHERDQDRLKMDLKDLKIELYKLEKELTEWKDKYYSAISELIEIKAELEKALIAINHAEIDCEVTRE*
Ga0078117_10205865F000473N/AMPNNTHFKHGVNLWTGEPNKPVFYTDEMKKKVWEIKKPLLLLMDVVKYPDFLALRLYEDNFIQFHGSEKEQVIDYVSKVKKLIESYGVRCELEGVPSGKQ*
Ga0078117_10205868F000671AGGAMDKVLCYSCSKPKNKLELKKSTLMPINLFMCKTCIDEKLEPRWVVILAGRSNGHDAVKDIIQKKKYIGNDITASELLV*
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