NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1024579

Scaffold Ga0078117_1024579


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1024579 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4208
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019642Metagenome / Metatranscriptome228Y
F043835Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_102457910F043835GGAGMSNYLDNYVGVWERFAEFTKAHPDYRIKTHVLAESLAKECDVYIVKTELFRTEVDANPWTTGLSSESKSKQYALELAETGSLQRALQLAGYLAKPTGAKPYQSHNKPIQTTSKALADFVKEQRPDDPEPIHHNIEHLVETLGAEIVDEAPICNHGVMVLKTGNKEGKDYRGWVCPSRNRDDQCPAKWMKIDEAGKWVFKK*
Ga0078117_10245795F019642N/AMDANNAAAFIASVLGSIGLLIAGLRYIIKLENLPLISRLDKLESTIELALKERIVNGPKKARR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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