NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1030371

Scaffold Ga0078117_1030371


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1030371 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2893
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012328Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_10303713F012328AGGAMKKNAPQTPAEQNIWDTANDTAPATQSKQQRAAEVAEEITQTKTVKPQAPRAENAGDYDLEGLMTDFPTAKELERFVYDETGVVLNLKGRANKLKYQVAMDVLNGVEVDQKFIGGDNPYVEKSEMVPEEALRPCPARSEALPARSQVQNTFFTNMVPHPDPECRAMDKKVHVMFRKYNNGTISYEILGPLELKPHGEKIDKFGRTRPEIMKWIDPRTGEQLAVREDGSLTPQGKRLRAMMQTGKFKVNASNQWDVWVDREFVTLNDSVADNPWNV*
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