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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005758 Open in IMG/M |
| Scaffold ID | Ga0078117_1076952 Open in IMG/M |
| Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2619 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014737 | Metagenome / Metatranscriptome | 260 | Y |
| F023109 | Metagenome / Metatranscriptome | 211 | Y |
| F085345 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078117_10769523 | F014737 | GAG | MTTINAVTGSQINHAEFVRLTVGNAATVYTFCNAAAPITVNGITFANLGALLSVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVAITENFDTEQRTRVATCSISCSSMRMILENRLSGVKTNQNNWQFLYPNDTSMNRVAEISNTYFDFGAPPMRQTQASETTVTMENSAGDGAP* |
| Ga0078117_10769524 | F023109 | N/A | MIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIQGRGFIYVDSHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERAKAMLETGQIDVVCTSVSANGPLIDYTRRGYKALGATFVRE* |
| Ga0078117_10769525 | F085345 | GGA | MVSTLIGAAANYLVNALGISLTAATFAVSFAVSKIVTRVFADNPEQQQDSGVRQQVPPSAVNAIPIVYGTAYMGGTFVDAVLTDDQKTMYYVLAISSISPNGQFTYDTSDMYFGDRKITFGTGADSTKVVSLTDEAGNVNTKISGYLYINLYTSTAGGTITSANGASAPSTVMGGSDIAVAQRWATSNRQMNGLAFAIVKLVYNRDADTTQLSPITFYVSHNLNGTGVAKAGDVW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |