NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100028224

Scaffold Ga0066903_100028224


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100028224 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6256
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000853Metagenome / Metatranscriptome860Y
F003594Metagenome / Metatranscriptome478Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1000282241F003594N/ARRRAFITLLGGAAAWPLAAAAQSTTQPTQATTAKPPQIEVVRVKPIDPAVPKLDFQLSDGSVDLMKAFSLGGSEGIGAAWKIPPTDETFDARFGQW*
Ga0066903_1000282243F000853AGGMNVPAEQPRGQTSLDEYGRGAESDCARAMAEIEKVLHELAHSARPSSSNSTSPDNEASNAPSLVPEPSPIDRLVLDAGLDFACHKDGMIELTEAGFRRMGQAHSAGLDTVIEVNRRYLLRFPASPAP*
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