NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100060860

Scaffold Ga0066903_100060860


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100060860 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4718
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000702Metagenome / Metatranscriptome929Y
F003316Metagenome494Y
F063480Metagenome129N
F076346Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_10006086010F063480N/AAIVPAPPPEPFAVQVIIVDWLYREVDGLAEIKMPVLQHIVGHRNREVYEYLELTHDVRDSRAAAIYSA*
Ga0066903_1000608603F076346GGAGMDAKYFKEKADLCARLADGLSLNNPARFQLMDLAEDFQKRAKELDAQEAEQQSKSHKTK*
Ga0066903_1000608604F003316N/AMSKRLTSFCILWLVLGAIADANAASTIKITCNGSLTNTREDGVTLGQCDLNFISIKQMDEIQTVCGIPGTIDTPAENQCRIRAVVSPDPISTADKRKLYKVLELWSVDKR*
Ga0066903_1000608609F000702AGGAGMRKIIRGYARDKDSNLILIGTIPVPQSKDKRSPAARQDKRGLVRQGATIFKKETIR*
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