NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100132178

Scaffold Ga0066903_100132178


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100132178 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3515
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004828Metagenome / Metatranscriptome422Y
F015010Metagenome / Metatranscriptome258Y
F023771Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1001321782F015010GGAGGMETSTEYRRFAQECRRLARDAKTERHRSIMEDMARAWDQLAKETDDEVSHAPP*
Ga0066903_1001321785F023771AGAAGGMPLYFFHLSFGDRTVPDEEGVELPNRSAARDEVLAVIRDLADPEVAGNPRRWAGWFLQVADEGGEFLRMPIGHPALEVVTSEGQAELSGVKPVRLAGTVATPQGRRSAALVLQMSAVRKQTQRLLQRNLQLRDELSSLRLASESIRVRTRRLVSLARLAGVSADVVYRVANRPPRRSPPHLVVLPGG*
Ga0066903_1001321786F004828AGAAGGMRSKSDHAWRMAAQCAKLAQGSDEKDEREFYVRMRDSWITVANRYEFLDGVDEQGASSERPRSRAGQYIPYPVSRSLERRRVPVPRR*
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