NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100163972

Scaffold Ga0066903_100163972


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100163972 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3230
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035066Metagenome173Y
F061159Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1001639722F061159N/AMTVTASAGQAADLKIENGPRFSITCTGVLETRNGIYFFNQEKPITALPPDDEIACWGASILPKEKGCWPVRGKSIEQILAVCPIGKTCQVAGVLKNLTHGLYCWTEVNSVIAK*
Ga0066903_1001639723F035066N/AMNKLIASATLCVALTLFAIQAQAQHKTHSGVVHTQREYVRLAEVCAFGFWCDAGILNSNNSAPPRPLVTPKAKLARGIDRSQFRPEIADDPELVVKMTHMVFGEVGRHAPLAVKIIQLETAFNRAQARGQTLAHVLLSVKESPSDGYYAIETYCAAAEPTPEEVETFRKTVLTVVLHGSNLSDVGYGPMTGNASADVAAHQFAKGNHGYQLQAGDAYFREGPFINDFPEISPSALSGLGLGGNNATSFGSFSAPYCKPGSAPIRRYCSVADARKGPRWLDAFRALAPDRESSQRAAGGGKPIVRAIWAIALAENPNEKISHRANYRDDRDGVSRTSRGSKN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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