Basic Information | |
---|---|
Taxon OID | 3300005764 Open in IMG/M |
Scaffold ID | Ga0066903_100289873 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2576 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008460 | Metagenome / Metatranscriptome | 333 | Y |
F016291 | Metagenome / Metatranscriptome | 248 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066903_1002898732 | F008460 | AGGAG | MAADNADDLVPFLNVRVIRSTAPALLCRIGERSVWLPRRHISGKLWCVGDRGKLFIRRWLARERHLIDPDGVVIASPPVSPSLPRQAGRLHIVRGDRLPTSCR* |
Ga0066903_1002898735 | F016291 | N/A | AVVDGALTSTPGRFNYNLTLGLPGANTACGTSFPGSHLCTLAELQAAPATDLAGLQDTGGKPVTSFWAIDSSANPLQQCQDDVGGGSGKNWEYATAHTASRGEKITLNNATGALGALQTGVQCNTSGNSSVGCCH* |
⦗Top⦘ |