NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_103514726

Scaffold Ga0066903_103514726


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_103514726 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007659Metagenome / Metatranscriptome347Y
F038033Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1035147261F038033AGGAMSTDAFDGEAISRADREFLTRLGDHPLLRNPLYSAPPPPLPDYAALTSAAAIEAAQKACFVAALDWLLVNYAFCKSAFMGKGGIISLVDGEMGSLASLRGFMQPYAFVGEGPHGGTKIASVVDDWMRHPSRVHIDKIQTRFDR
Ga0066903_1035147262F007659N/ALPVLPKAAYALACNLFDEIAQAAGLAAVSESSRRSETELRRFELDADTEIETRDHGAMTVTELERHMRGRRNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK*
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