NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079639_1001000

Scaffold Ga0079639_1001000


Overview

Basic Information
Taxon OID3300005800 Open in IMG/M
Scaffold IDGa0079639_1001000 Open in IMG/M
Source Dataset NameSediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10150
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Thermal Hot Spring → Sediment Microbial Communities Of Hot Springs In Rotorua, New Zealand

Source Dataset Sampling Location
Location NameRotorua, NZ
CoordinatesLat. (o)-38.0631325Long. (o)176.360798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013170Metagenome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0079639_10010003F013170N/AMSVHLHTTITKKANDILEELAKTYGTKSRVLEKALETLLRVDKVGSCNDCAIKAKVSEQTKLREALDLTSISRRNLDSLLEIAIGNKTIEDFIKEQKAEAKNTIEILRSSISWKPPSNFKEFLIVLEEIRNLTNMYEIPSYSEIDNIAILRPKVFKRLPIIVAFNVATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQIEKELANVTPGFFKSTLMLVGPAFMNWAEKHLEEPITDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLKIVFQATSTSITRMSLAALSVILATRGWKTLNYSTEHATVNMTIQYVGAEDQSILDQLAELSLFQVIGKQFLDVIPVPRDLFNSFALKVYESDRRKFDEIYRATGTRISNAIRMLARNDTEKIRRLAKNFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTAFQNLLSFKLKLLEKPILEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERITDMYRELGVEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGRIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEAGE*
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