Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000540 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000540 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33896
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (71.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33896

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (71.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012965	Metagenome / Metatranscriptome	275	Y
F021975	Metagenome	216	Y
F025995	Metagenome	199	Y
F047988	Metagenome	149	Y
F073497	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100054030	F025995	AGGAG	MPIILSIVRHLLTLAAGGLLTFGIEERDAANLVTAAEPVVAGAVLYGVSQAWSLVDKKKRPK*
Ga0079957_10005404	F047988	N/A	MSDTDLKQLLESQEPIVLENPQPSPNAVIEVLPPVLREIPQTRHHVKDEQLGLQIRDMAKLGLGKQSTALAARVTPYILEKYYLDEFLEGQADMQRGLAAKAVSEAMDGNTAILLHLLKTKLGWSEHQTLEISGEIRNVVSSKPLTKAEFIQRYLTQNGEDNSGE*
Ga0079957_100054041	F012965	AGGA	MTISTVIQNVANEAGYTVESNVLASTEVTTKQLLAIANRINRDIFEAYPWPKCYASGSITLVGGQATYQLPAAFSYYHYETFWNQSTRWRVLGPMTEQEFAEIQGFGLNTAVYQRFQIRGITNSELLISPTPGASYSGDIIIFEYIADRSVRPVTWTTTTAFAANSYCFYNGNYYQTTAGGTTGATAPTHTSGSVSDGGVTWTYYNGPYNQFLANTDQSIFQEKLLEQGILERFAEIHGLDSIRPRFDMQLNEEFSRDQNGKVLYAGGHMRDPMFARNGVAVFGTWI*
Ga0079957_100054044	F073497	AGGA	MASATTLIGLGMPAELASAVSDGVNSNVVNATAAGVRTKQAINNVNDTTPTAAELTTSFGAPATVGSGFVGVVKDADADTNCFVVVSNGTSYFYLKFTKAV*
Ga0079957_100054048	F021975	GGA	MKYKLYQYCHKQQKVVPIEEVHREYQSHARDLFIQDEMEPTRNPLNPKEVYTSKSKLRAAYRAAGAIEVGDAYDRGYRPERESGATERRLVQNIKAKMIERYRNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000540

Overview

Ecosystem & Geography

Associated Families

Sequences