Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000883 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000883 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27451
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (65.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

27451

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (65.22%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F006841	Metagenome / Metatranscriptome	363	Y
F078427	Metagenome / Metatranscriptome	116	Y
F097194	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100088316	F078427	GGAG	LEYNLPLIQASSGLRNLMSASKGGIMKESLVAQISAYVYYNAQVISKITSNSGFKNKFREVIFNQIEKDFGEFIDSQARVKPRSLHHVYEWDQTGSSEARLFKLNKLNTDGLGFSISYEFLPSKTFAKSEGNRRHVFVNKASVMEAGMPLKIAPRHSKRLVFETNGYKVFMPEGASVTVKRPGGVGVKNAFMMTYSRFFKSNLVNLSIKKSGFQQLFNNSMAKALRLPSEIKTVKYSFSPNSLSTQADAALTSAFGASL*
Ga0079957_100088317	F000258	GGAG	MTINYKLDSMLELRKYLWGRLKATGIFDEDNYYSDNIGEAIIPILPVQQQPDMSQFLSGKKHIIYDKIGVSYDTLWLICTEQILFTVYSTDVSEINEIRNFMIDEFRRMDDSAKDINRSTGFNTSKFNIHSVHVADMSPTAPSEEIQGFFSADIILEVKYSRNTDSSGRFI*
Ga0079957_100088319	F006841	AGGAGG	LATTVYDVEDIKLQNGSTVQLRPLSIKQLRKFMAVMNKASESTTEDQSLTVLIDACAIALETQLPDLVKDKDKLEEALDVPTINRILEVCGGIKLDDPNLVAAAVLAGQN*
Ga0079957_100088320	F097194	AGAAG	MPELLQTIESMQMKEKEDRIFLASLQGVDIRGDEKEEKGPTFEDIRLRAMGIEASTDDVVSLQGAMAAEAGFGVGAGLGYSKEQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000883

Overview

Ecosystem & Geography

Associated Families

Sequences