Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1001585 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1001585 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20779
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (24.14%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20779

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (24.14%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F008356	Metagenome / Metatranscriptome	334	Y
F035227	Metagenome	172	Y
F035278	Metagenome / Metatranscriptome	172	Y
F041765	Metagenome / Metatranscriptome	159	Y
F056337	Metagenome / Metatranscriptome	137	N
F090104	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10015851	F041765	AGAAG	MLNHKKIMEDSAAFFNKEVDKVILKVTKAKTEKTRSKYLKQMLALRNRLTLEVKMLDDLGNF*
Ga0079957_100158510	F001732	N/A	MTSKIVSILLLVFLVTGCFSTIKPAKQIDDNQKIIAKEEKKVDDTLVQIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFIVSALTTIMVFVIVFVLLRLLATVHPAAAAAFSIFNMLGSAVISILKALTPKAFEMCNFTTKEKVDEFKSPLVKIVDVIQELKEKQKESPDRVYPLNELLKRFEKEMDSDEKDLIDHILREQKWIK*
Ga0079957_100158512	F035227	AGG	VNDNSSNIHRAVNITTLSEKEIKKYSLVKTGDLFKKDDHLLLYDDQYVKIGNSSILFKNKVLKENTVYRRK*
Ga0079957_100158515	F090104	GGA	MKEVEYILKKLIKSIQTVDTNKNIPYLVKDIDKHVQEAYAQLYDYRAQKSVYKPLNDNKRGHCC*
Ga0079957_100158519	F035278	GGA	MNDKHIKKILDKQFKIANLDLKYEDVCNNQTPNWLTKYSYAPEDNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLRTSTRSVKNKKNK*
Ga0079957_10015854	F008356	N/A	MNPSEFERTKPVNTYKKIKQLEKLIKEEQIKTENLYANRIATLDTMLNAVHDLMETFKRGE*
Ga0079957_10015857	F056337	N/A	MSDQYNNNSYDAVLSRMEQKLDTIAENIDNIKQSQKDLESRVSGLEYFKYYLAGIVAAVTIGANYLMNKVKNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1001585

Overview

Ecosystem & Geography

Associated Families

Sequences