NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1002239

Scaffold Ga0079957_1002239


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1002239 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17109
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024535Metagenome205Y
F033362Metagenome177Y
F037637Metagenome167Y
F050223Metagenome145Y
F104496Metagenome100N
F105026Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100223910F024535GGAMAKKKINIDTDNIDVNLEKDGTNIKLDIDTKNVDIKIVRDEINKEFNLDSKNIDIDIKKTPDGVEVKVDAQGALWKAIAKRIVKFILRRFKVGK*
Ga0079957_100223912F033362N/AMINVTQLIEVIKKQGAVGVLALWLAYTHFEVQDVKDRLYNCLDKNEYYNRKPIEERQPILPSVKNDTVAVVENKSRKLAKK*
Ga0079957_100223928F050223N/AMIQLILELLKSDDFFGVSEIVDIAKGKHELTGNIKKIYKQEKRKQWLKKERLN*
Ga0079957_10022397F037637N/AMNYGNKQKRTKQVNVSFEWTNKSDLIAILSDLRELIGSGVEMYHNQKKSLETADKWHEVEFRQKFVNKIHEEVESDINGELKLVIKSNF*
Ga0079957_10022398F105026N/AMNSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0079957_10022399F104496N/AMKKRTGILINSIIILLSYTYDSYLMLGAGVICLSLVLISKTKRHELKN*
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