Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1002690 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1002690 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15439
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (75.86%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15439

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (75.86%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F003768	Metagenome	469	Y
F020354	Metagenome	224	Y
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100269019	F033428	AGAAGG	MSRIEGSLVDDSVVIILKARFAKLDDKSRLVIREIADEAHGSITMNPPTERRIGIARILLEIAENDGHVDKDLVRSICELRTGKKYNTAGEALADLSWVDAERVWSSFQDIYNNRVQLEYIPVSNHYIIKEYNHVR*
Ga0079957_100269022	F041769	AGGAG	MTHDIDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLTAAIRETDAAKAQIHVLNATVERLRLHIAQGVEL*
Ga0079957_100269023	F085645	AGGAG	VTKGAEILSEAHDLVTGPRQQAYSHPFDDYWKVSQLFYAFTGIKVSVKQAVMFMICVKLARIGTNDTNGRWHRDSVIDAAGYLACLSMVHEHIEDMHNDAVSRFKDDA*
Ga0079957_100269024	F028157	AGGA	MSIADPKFATVLADSDGHSRWVAHTDATDVMAAYRQGGVHLLVTLDPEGNITVAFKPGRHWEATWSPPITLERR*
Ga0079957_100269026	F051124	N/A	MTKRTDPIEQYLNNTGSGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKAKIAKAWMEREADLDDDE*
Ga0079957_10026905	F003768	AGGA	MARFAKIEDGTVTQVIVVSNDDAPTEAAGQAFIASIGLDGEWVQTSYNNNPVGEPPASRGKYAGIGDTWTGTEFVSPIAIPTE*
Ga0079957_10026907	F020354	GGA	MFKKIGQEVLALGFTLGASAITIMTLSGPIQNWALFFTFLSLALHLAGTATQGDGDDN*
Ga0079957_10026908	F003378	GGAG	MTTDMGIKQNATIARFLDLGQRLFSLFLARALPAVTGGAVIGVSVSKAAILAGAMAVLEVVQKLASASTDGELTSDEIKEAFSNGKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1002690

Overview

Ecosystem & Geography

Associated Families

Sequences