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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005805 Open in IMG/M |
| Scaffold ID | Ga0079957_1003009 Open in IMG/M |
| Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14508 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wichita, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001279 | Metagenome | 732 | Y |
| F013413 | Metagenome | 271 | N |
| F024785 | Metagenome | 204 | Y |
| F032279 | Metagenome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079957_100300916 | F024785 | N/A | MDVWITRAVRHSDKSLWNNGSWVVRDVRGKPGTISNHAKGVAVDLSYRWQSEKNRGRQNGRKVSLAYMIKLLENADTLGIQLVIDYALNRSWKCDRGTWIGGKFESGDWWHVEVDPVMCNSSELAKQAWDKVFGVIPAVIKNPV* |
| Ga0079957_100300917 | F032279 | GAGG | MPFIIKTIIAFALSAIGLGVYHVPQPRPDMASTAPTSAPYEALGGFGQYIADTYRYVPPVTTTLAPEPVYKHGDCSWLPKVALQAGWQVDQLKQLRQIALRESGCCPNRAGGDRVDQNCNVTGVAEWSHRSDSGLMQINGVHWLPTHAQYDGLICKQMQICTQEPLLDALTNLKAARLLYDRAGWSPWSICHRDNTCK* |
| Ga0079957_100300918 | F013413 | AGG | MTENEYNETFDMRMEREHQETLARMREFQIIGEQISKMPVTSTRTLEIEVRYLMGIISELEAQVKNLESETRRLEQLVHRVTN* |
| Ga0079957_10030099 | F001279 | AGG | MPVSTTIQVVGVKDTINALRKIDPQLQKDFKAQATQIAEPAISAGRAVYTQVPLSGMAYNWTSNGRKVFPFTVSKAVKGVRMRFDTRRNAVGVILIEQKDPAAAIFETAGRANANKLSANLEPVTAGRTRLIGPAVYRARKKIEREMQSMILDTIREVQKDI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |