NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1003155

Scaffold Ga0079957_1003155


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1003155 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14153
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (31.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015080Metagenome / Metatranscriptome257Y
F027828Metagenome / Metatranscriptome193Y
F058096Metagenome / Metatranscriptome135Y
F061794Metagenome / Metatranscriptome131Y
F082582Metagenome / Metatranscriptome113Y
F084145Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100315519F082582N/AMTVDFSKDVMLGMLRKGQTGTQILNILDVIVPQEVVEMTREYVCDQLGIADCPENDDEIEAYLAAV*
Ga0079957_100315520F084145N/AMFLSCPVSHDLIDAEWYQDVDNAKEDALDWSVELSGETVFVYQAVEGEDGDYEFKKLYSVSA*
Ga0079957_100315524F058096N/AMMTELSIGECKVMWVVGALQRLATLGMIGPDIPLKLTPEAVDDYLEIDNHRNILFESDFEIASIFTALAKDECDEEPEPDDVEAIIDLILEYKNNRTEIVKFALSNQVI*
Ga0079957_100315525F015080N/AMMFDLLKFEPHNIPNAIAARHKFENDWEISVVAGPGLYGRIDEETYEVGIFRPNGNLTEDVSGWNTKHEVSAMMWVLSQL*
Ga0079957_10031553F061794N/AMPFTKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVEKGKHLLKKYINNLG*
Ga0079957_10031557F027828GGAMMAPTTETMLDTVLTMEEILTEKQLLALRDILYFYKEFELELYDYPSEDTLFTKTQRELFDIFDIK*
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