NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1003815

Scaffold Ga0079957_1003815


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1003815 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12691
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019614Metagenome / Metatranscriptome228N
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100381514F042296AGGMNLFKTIIKWCGIILFTAFAYAATLPEPIKVYLIVSSRSGEYTIEKIYLRKENAEKYCEMFKDSHNYVIEERKLTE*
Ga0079957_100381515F013524GGAGGMRTNSEVVARLRDFANSNCNVTIDPKLCEDIRYLCDEVERFGNEIVKANNFMDEDHITIQRYKNKLKRCEEKLGNYEPF*
Ga0079957_100381516F009135N/AMDKGPKYYLQVNLPPNFDDADAEVIRTDIMAFLNSKNQYGALYGPKSSKKGITIDKVSWRTNED*
Ga0079957_100381521F006181N/AMTNNIVHVIYPAEFTAGFVIKTNGEVDPHDILEMVFAQWNHGSGMESELFVNSKKRSLSVNDIVCVNGRYWQCASFGWNEVTAEYVNQLEEAVENHPSRFHGAWFALNDVMWDRNRKDNIVAVI*
Ga0079957_100381522F019614AGGMNAASIATNKIAVTYTAFENREFLTFSVPNGWDDVKKLVNKVLTYEGRDFVHSGWNSDKNECYFVHIKNAPAAVATIH*
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