NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1004246

Scaffold Ga0079957_1004246


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1004246 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11950
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F016149Metagenome / Metatranscriptome249Y
F051715Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10042463F051715AGGMQGGERHEAFTYPDEQWIYYVMADKFGWTPDQVDNLPAPMTDWLLSITALAEEVKADRLDKQS*
Ga0079957_10042467F002722AGGMGGRVGVRDTLAQFISNPPIQNLNQVFVSFPKRINFQINAQPGQMTRSACVVFIAQERENRLAIGGATNGWKRVDYTVILQLYVHSLHAESEDAMADFDILIDNIKERLRSDHNFGDSTGVLVWQGAEPVIIGRYGEPATAKEGATDIFAELEFEVTEMIQA*
Ga0079957_10042469F016149AGGAGGMGRFVAPDKGVKETVIGNKTYSTDKGGLYNVENKRHAEALKREGYFEASLNPYSQGDRKRGFSCVQCGFDGWFRKCGRCGHEATDTPRDGE*
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