NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1011751

Scaffold Ga0079957_1011751


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1011751 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6532
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F004666Metagenome / Metatranscriptome428Y
F008305Metagenome / Metatranscriptome335Y
F038669Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_101175110F008305AGGAMLGYTYKDIQNFGNSLTWAINNCPVEHKQDLLTIWDFFEGLLAEGYIDEPVN*
Ga0079957_101175112F038669GGAGGMIISDELQPHLLKLVNLGESGLDIMHGELKNLMYECETDLANVSELQDMPEYKYLSGRLDALTELYALTYNLSFAINERGNV*
Ga0079957_101175114F004666AGGAMTTKREYLASKGITVGRRGRFSAAAKHAISEAVKNGVQFTAETPNKSK*
Ga0079957_10117516F001043N/AMSIHIYMKGPSMSDYKDGFQDGYKFAREELIEKLREIDINDIDAWLIDRLSDMIESNKI*
Ga0079957_10117518F000450AGGCGGVGDRANFVFVDGAGDCIVLYGHWAGTNMLGRLADAVIAARPRWADESYATRIAISQLIGDQWSMETGWGLQVNSIGDNEHKIPVINWQEQTFSLHEPDSHRNLKNKVLGMKNEAIFTQDLTSFCEEHAFNKILT*
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