NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1018546

Scaffold Ga0079957_1018546


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1018546 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4935
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F003658Metagenome474Y
F010680Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10185462F010680GGAMIVQLSKDEVRVCANLAVERWLTKFGSVDRPNYADGKKAGRLEPEINANIRANVAEWAVARAYNLQWSVPWYPNEFHLRRKDIPDVGNNLEVRTVRTLDSIPFWKKDAGKTIVGVKVLDEEYYSEVEIYGSFVADYYMNDTYYRADINGWRVPIQEIREQFNERTTTL*
Ga0079957_10185464F001531GGCGGMMSANWDDIQKWDYVVDSVALEYSRKFDMVEISDLRQVLWMWFSEHPNKLKEWEAKGEKDAKNLIYRSLRNQALDYCQKWKAKTIGYDVSDLYYYAPEMVEALLPSVLRSEYNTAHKLNLGRVGRPSAPAEGGNLVAMMIEVDYAYWKLGKEDRKILFMRHAESMDFKEMANFLSLGTEDAARMRHKRSINRLIRKLGGFKPFPDYDSEESKEEEQED*
Ga0079957_10185465F003658N/AMIDLTGEPTMVCVCGSKMWNITVMWDEETRAVGWYDLRQECKQCGALATAPTEID*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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