NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1019568

Scaffold Ga0079957_1019568


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1019568 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4771
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005727Metagenome / Metatranscriptome392Y
F034907Metagenome / Metatranscriptome173Y
F058099Metagenome / Metatranscriptome135Y
F081278Metagenome / Metatranscriptome114Y
F095381Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0079957_101956810F058099N/AMTKQLLISQLRLGKNGNDILHILDALCSGMDSGESRQDNVPTLDEIQF*
Ga0079957_101956813F034907GAGGMITAIVGGVILATFGIMFYLDDRMGGGLYDPDPTAFDRYRRNRK*
Ga0079957_10195683F081278N/AVIRRHATADDFTRWESAAAAMTDAELIYAAADCRKVESLWRGVDGMVEGFYSDQAATYGTELYRRRASR*
Ga0079957_10195685F005727N/AMLHTLTRSRSASYHRATMLKLLIGGTLLWLLWEPIHPVRHVTAEALSTAAEMIRR*
Ga0079957_10195688F095381N/AMTTIQVVINGNQVQGQIDEIAKILGMVSNTMTPPVSSTLEEELLPFNKFAIRELTMHLGEELATQVVNKLEKCAKSYFPDFRNFVGMYQKVAGNIEHRQLLKTISAVYRFKFGRYMNESAKYALKSEIKYATICPHCGAVANAFVLRLQKEGLW*
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