Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1022709 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1022709 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4329
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

4329

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F003603	Metagenome / Metatranscriptome	477	Y
F026195	Metagenome / Metatranscriptome	198	Y
F035764	Metagenome / Metatranscriptome	171	Y
F045752	Metagenome / Metatranscriptome	152	Y
F061853	Metagenome / Metatranscriptome	131	Y
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10227091	F001280	N/A	MVQDSATTVSNMCVECGCGALGSSTGIANIPGGILDVSRDGEAGLTLNMTATPEQRENFINE*
Ga0079957_102270912	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGLVSEGLALAYKLDQVVDKIKDKNTFNNLKLPITNQERKAIIDRMPKEKTGDYKYSWLHETNNTNKVTIEHPFI*
Ga0079957_10227092	F001176	N/A	MDTPPNSQPSGAVTSQEAARKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV*
Ga0079957_10227094	F061853	AGGAG	MNKKTVGLISLGLALAAIAYVTYNSLTQLKDIDYDLFDIEEDIDSEE*
Ga0079957_10227095	F084237	GAG	MTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDRDKNGVAYWEKYEERLKYMEENGI*
Ga0079957_10227096	F035764	GGAGG	MIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPKSMEIASAFWEESDGWKGWTVEENKYYFNDIPEHDLMGVMESLEEMTSR*
Ga0079957_10227097	F045752	AGTAG	MADPNQTPARGNWACPCSGCSKAVAFERDNLVELILLHKAEYLIYRGSSFDAEGNLMWAKDDALAYSEGLDYVVKLIEDRKPKPKKKG*
Ga0079957_10227099	F026195	AGGA	MMGFLDNLEEYIDFTEDIDKDPELESGYSTGKWSDDDDFGITPFLGPNR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1022709

Overview

Ecosystem & Geography

Associated Families

Sequences