Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1022990 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4292 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003066 | Metagenome / Metatranscriptome | 509 | Y |
F011384 | Metagenome / Metatranscriptome | 291 | Y |
F011921 | Metagenome / Metatranscriptome | 285 | Y |
F024784 | Metagenome | 204 | Y |
F068573 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_102299010 | F003066 | GGAG | MAKKEPVAWLYEEFDVRSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLIPGEPVEEYKGLSKYDSKKLTEAHGGL* |
Ga0079957_102299011 | F068573 | GGAGG | MVDSKPLTLEEIMKAYSKVFPTRYEPMTLERMIQFVRIIEQLHGVKDVH* |
Ga0079957_102299012 | F011384 | GGAG | MYTKLDDQRQAKFVIKYITAHPSCSIKDIVQECVTNRTRLKYLESQGYIVLPKLTRMDILDRRFKNRKYVSVTVGREYGKWQEQKRY* |
Ga0079957_102299013 | F024784 | GGAG | MARAEKILEVVVWLLIVGGMGWFFYGCYQLIDLFFIRG* |
Ga0079957_10229905 | F011921 | N/A | MAIPFCILGVYNMANGLEHIADILKRLNDELKLDNDKWERENVTTTTLRPGNDATTSTRGESKDEL* |
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