NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1023644

Scaffold Ga0079957_1023644


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1023644 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4218
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F003965Metagenome / Metatranscriptome459Y
F005348Metagenome / Metatranscriptome403Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_102364413F003965AGGTGGMTTLIINDTCKTHVPNKSAISNVGDDQFTFCEMCEQNIERWYNDTDPERLPMWSDWKVSN
Ga0079957_10236442F003393AGGCGGMKTIEKDDTIPIMDYVKADVLTAGQLMVDDLIRVADEVVSITEIISLSDGYTLEIINDFGERELIQVGEYEQFDLMILQ*
Ga0079957_10236444F000808GGAGMEYNYALTTSYDGELIHTLRVSDMLEAVSAWDKCVDYGTAKQYATYNLSDPTGKMYTKTFYTNGEVVIK*
Ga0079957_10236447F005348AGGMINSVMRFDCDECSGSGLIFWGDDLNYDVEKCECQDFALGTLFTTKESD*
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