NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1038670

Scaffold Ga0079957_1038670


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1038670 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3054
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054870Metagenome / Metatranscriptome139N
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10386701F063689GAGMEVLFRYQVFDDLGEPIRRFRTKHEAECYILHRGNHRIEKLPAPPKENVFDLITDEPLF*
Ga0079957_103867010F054870AGGAMKLLTALLIALPIASFAGESPKLRYNWVENKYNYAPKEAKLKYNWTADKYEFVMPNSKLKLNTQSNNYEYVQTQIDPYQS
Ga0079957_10386703F104778AGGTGGMEAKAWLIEEFSKDGQLVWKMISFFPPESLQWMSDIKGKKHNLVISELGVINSKKIDGVEKKYDSSKFVVGL*
Ga0079957_10386706F066774AGGAMTTNNTMASLELWVKQLQGSVDVQEIAKTRPAPIEDIVAPYAVFLRMYDKVGLLAATNRRRSSRCNVEFVFDGNTRKLKNVRMINQDEE*
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