NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1053170

Scaffold Ga0079957_1053170


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1053170 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2463
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F074876Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10531703F002060AGGMDYTSITIALLAAVFSGMGTAIVAGLKEAKKEKRRQAEREQDHLKLEIKDLKIALYQLEKELTDWKDKYYDSIQELIQVKAELENALVQLNIIELKDMDSEF*
Ga0079957_10531704F000671GAGGMDKILCYSCNKSKHKLNAKKSSLLPINLLMCETCINSKFEPRWVVILAGRSNGADYVREFVLKKRYLGNEISASELLV*
Ga0079957_10531705F074876N/AMELDASWRVCLVEEYYEIINIVFIHEEGIYGTVDKLGAFASVVKYQKDGLDYEVLLENDEFAIVDEIVFHHVEEDNG*
Ga0079957_10531706F000473AGGAGVSSKHFYDDKHFKYGINQWTGEPNKPVFYNEEMKKKVREIKKPMLLLMDVAMYPDFLTLRLYEDNFLQFEGKKKEEVIDYVTKVKKLIESYGVRCELEGVPSGRVL*
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Biomedical Sciences Research Center "Alexander Fleming"
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