NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1133248

Scaffold Ga0079957_1133248


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1133248 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F028166Metagenome / Metatranscriptome192Y
F047645Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_11332482F028166AGGAGMSDGLNLTGFNDTKAGATNNLDLNPTGQEPKPAFPAKDVSSQDGAGLGNGGK*
Ga0079957_11332483F001280GGAGGMDKKPTADTFGSQTGEVSIPGGVLNVSRDGESGLTLNMTASQQERLRFINE*
Ga0079957_11332484F001176GAGMNNGTGMDSPPTDQPSGAVTAAEVGRKKPSQGKFRSGIQEKRPIKIDRNRHGIRRETTIAPKKTRPKKV*
Ga0079957_11332485F047645AGGCGGVQCKHVYEYVYSKICPYCGSDTHEPDHEKQHKLFVEYYKSEAPKAYICPVDGGTIRGWWSI*
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