NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078778_102149

Scaffold Ga0078778_102149


Overview

Basic Information
Taxon OID3300005815 Open in IMG/M
Scaffold IDGa0078778_102149 Open in IMG/M
Source Dataset NameMicrobial communities of produced water from Jiangsu Oil field in Yangzhou, China - Well_W9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, San Diego
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Petroleum Reservoir → Microbial Communities Of Produced Water From Jiangsu Oil Field In Yangzhou, China

Source Dataset Sampling Location
Location NameYangzhou, China
CoordinatesLat. (o)32.0Long. (o)119.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024691Metagenome204Y
F041530Metagenome159N
F047350Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0078778_1021491F041530GAGGMAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVREAYGKIYQKWTQLSEEEKAYWNELGKAEKLSGWNVFFRENMKAQTFKIILDCSGMSTTYENYTLIMFVKDFQDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDPVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGPSFFAFFDDFT
Ga0078778_1021492F024691AGGTGGMRYHTEGQRDKRKLKTHIPLVEVKASKRKSTKHDRVLVILSTLIRNFSERVNVDHVKPPIALDKTLKLTDERGRKYDIAFIYEGELFLIEVKRCGKWQ*
Ga0078778_1021493F047350GGAGGMVNTETLISVAIVLFSAIIVRLENLNRRISRLEGKVEILCDTIQRDREIREN*
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