NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074477_1620893

Scaffold Ga0074477_1620893


Overview

Basic Information
Taxon OID3300005826 Open in IMG/M
Scaffold IDGa0074477_1620893 Open in IMG/M
Source Dataset NameMicrobial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56227
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (75.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameIlwaco, Washington, USA
CoordinatesLat. (o)46.31286Long. (o)-123.99663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031713Metagenome182Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F042051Metagenome / Metatranscriptome159Y
F042607Metagenome158Y
F071164Metagenome122Y
F074102Metagenome120Y
F096147Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0074477_162089310F031713GGAGMSNKNLTIDLKARKDVDGQVFYVGKLKCPALIDCSKGVVFLIFTADQGDEQLQIAMMDKKDED*
Ga0074477_162089314F074102AGGMKKQKIVRPFSFNGRSHQDMVDLLNKELPINLRYNEAMINRIHNKYPLISKTEISIIVRAVFQSFRDLLVLGNVLNFNGLFFDTKLFFFQRFRKGRIVPSMKVKLTTPPKLRKK*
Ga0074477_162089348F096147N/AMATEAKSNFVNKYLEKGEDQFYRFLISYAVNKLVAIGNGTYKGVPPDQELLEYYNQFIILYRREGDTVYLDLARLFRKAAHKIYRVMLKKDMTPRNGKFLNLV*
Ga0074477_162089363F042607N/AMPIKIIDNKKIDLTADEWNMYRKIVSSYTTQTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMSVFQHQHLRIMYARVDDVCRQMTDKIKGKIKEIDDVLDKHK*
Ga0074477_162089364F036462AGGAMTEVKLRDLIGDKLEEDFLDFDMTEIHEVLSSLQTEDATDLSHAEMLQQKALRGADILSEFLSRLVKTVAYLESQVNRVKNKVALEYKAADGRTTTEMKKWAGESSEEVEELQIKLARAKGGKVMLDKKYDILIRSHHHYKDIANGLRKTILGYGPIQNKEKIPEGYE*
Ga0074477_162089369F042051AGGAGMTTVFGEVSWNDDVYPGGGGGNKNSKDLFMRLDEGSNEMRLVTQPFQYLVHKYKKEGDSGWGQKVSCSAIHGSCPLCASGDKPKPRWLLGVISRKTNTYKILDISYAVFSQIRKLARNTQRWGDPTKYDIDIVVDKQGGPTGYYSVQPISKEPLSASDQQIKDTVDFDDLKRRVSPLTPENVQKRIDKINGVEIGGKSAPTAAPAPSKVDMSDDDDEAFPDYDSK*
Ga0074477_162089376F038776GGAGMSKFEINYSELETAIVKKAYRLEDVKDRIERVAFDVVRFKDDDEGANLWQIQSADDGDYIVAIYQQEPEEKVASDWSVQVSKVASALLVSYKGDPIVRIASANIGIPPTELPQAEKYLPKKLAENKKLVKALLNELEKSAKKEVLKKYPELV*
Ga0074477_162089379F071164GAGGMRISEMLNAIASWLESPDNEAILLAEYDEDCLEIVANSCVEAADLLRITAETVEDLEPHAPSKLTPEAIEDLGRIADAFDSSGDEGLMKQAAVIDELLLTIAAPPNALSSRKDLEDSRIEELKKKYESINKKLSDANKIADSEKAIEQSNIMKEKRILEAPLSTRYCPDHPGTQIARIGEHVWQCELDKKVYNFETGFTMEDGTKVPGGDVSGQTQGMNLPGYTLFDTREGRLGAGS*
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